diff --git a/Cargo.lock b/Cargo.lock
index a935bda405..979fffc169 100644
--- a/Cargo.lock
+++ b/Cargo.lock
@@ -1403,9 +1403,9 @@ dependencies = [
 
 [[package]]
 name = "deno_graph"
-version = "0.65.0"
+version = "0.65.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "bd7e17cc32255286c37c81a44425b71c4a7e1aadb7bdf65968a31d28415fa1d0"
+checksum = "06fadc0cd21f54794ab22e852d6c92487a65f0dd70b40eadbf3a8e249c760223"
 dependencies = [
  "anyhow",
  "async-trait",
@@ -1530,9 +1530,9 @@ dependencies = [
 
 [[package]]
 name = "deno_lockfile"
-version = "0.18.0"
+version = "0.18.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "dfe06eda519ed05b69da567bcba1d728c482fd553ddaa2ffe008468158da6de0"
+checksum = "9f348633cc4425b2a9011436e256b1ae8f6c8026ec2705d852baee8643dc5562"
 dependencies = [
  "ring",
  "serde",
diff --git a/Cargo.toml b/Cargo.toml
index f53ceef2db..bf075418fc 100644
--- a/Cargo.toml
+++ b/Cargo.toml
@@ -46,7 +46,7 @@ deno_ast = { version = "0.33.2", features = ["transpiling"] }
 deno_core = { version = "0.260.0" }
 
 deno_bench_util = { version = "0.131.0", path = "./bench_util" }
-deno_lockfile = "0.18.0"
+deno_lockfile = "0.18.2"
 deno_media_type = { version = "0.1.1", features = ["module_specifier"] }
 deno_runtime = { version = "0.145.0", path = "./runtime" }
 deno_terminal = "0.1.1"
diff --git a/cli/Cargo.toml b/cli/Cargo.toml
index cb52d3966c..7fe471dbed 100644
--- a/cli/Cargo.toml
+++ b/cli/Cargo.toml
@@ -65,7 +65,7 @@ deno_config = "=0.9.2"
 deno_core = { workspace = true, features = ["include_js_files_for_snapshotting"] }
 deno_doc = { version = "=0.103.0", features = ["html"] }
 deno_emit = "=0.36.0"
-deno_graph = "=0.65.0"
+deno_graph = "=0.65.1"
 deno_lint = { version = "=0.56.0", features = ["docs"] }
 deno_lockfile.workspace = true
 deno_npm = "=0.16.0"
diff --git a/cli/tests/integration/run_tests.rs b/cli/tests/integration/run_tests.rs
index 428de32389..298ce17153 100644
--- a/cli/tests/integration/run_tests.rs
+++ b/cli/tests/integration/run_tests.rs
@@ -1051,6 +1051,9 @@ fn lock_deno_json_package_json_deps() {
         "jsr:@denotest/module_graph@1.4": "jsr:@denotest/module_graph@1.4.0",
         "npm:@denotest/esm-basic": "npm:@denotest/esm-basic@1.0.0"
       },
+      "jsr": {
+        "@denotest/module_graph@1.4.0": {}
+      },
       "npm": {
         "@denotest/esm-basic@1.0.0": {
           "integrity": esm_basic_integrity,
@@ -1101,6 +1104,9 @@ fn lock_deno_json_package_json_deps() {
         "jsr:@denotest/module_graph@1.4": "jsr:@denotest/module_graph@1.4.0",
         "npm:@denotest/esm-basic": "npm:@denotest/esm-basic@1.0.0"
       },
+      "jsr": {
+        "@denotest/module_graph@1.4.0": {}
+      },
       "npm": {
         "@denotest/esm-basic@1.0.0": {
           "integrity": esm_basic_integrity,
@@ -1138,6 +1144,9 @@ fn lock_deno_json_package_json_deps() {
     "packages": {
       "specifiers": {
         "jsr:@denotest/module_graph@1.4": "jsr:@denotest/module_graph@1.4.0",
+      },
+      "jsr": {
+        "@denotest/module_graph@1.4.0": {}
       }
     },
     "remote": {