single factory

cli/args/mod.rs

@@ -8,7 +8,7 @@ mod lockfile;
 mod package_json;
 
 use std::borrow::Cow;
-use std::collections::BTreeSet;
+use std::collections::BTreeMap;
 use std::collections::HashMap;
 use std::env;
 use std::net::SocketAddr;
@@ -557,15 +557,6 @@ struct CliOptionOverrides {
   import_map_specifier: Option<Option<ModuleSpecifier>>,
 }
 
-/// Overrides for the options below that when set will
-/// use these values over the values derived from the
-/// CLI flags or config file.
-#[derive(Debug, Clone)]
-pub struct ScopeOptions {
-  pub scope: Option<Arc<ModuleSpecifier>>,
-  pub all_scopes: Arc<BTreeSet<Arc<ModuleSpecifier>>>,
-}
-
 fn load_external_import_map(
   deno_json: &ConfigFile,
 ) -> Result<Option<(PathBuf, serde_json::Value)>, AnyError> {
@@ -593,11 +584,10 @@ pub struct CliOptions {
   npmrc: Arc<ResolvedNpmRc>,
   maybe_lockfile: Option<Arc<CliLockfile>>,
   maybe_external_import_map: Option<(PathBuf, serde_json::Value)>,
-  sys: CliSys,
   overrides: CliOptionOverrides,
   pub start_dir: Arc<WorkspaceDirectory>,
+  pub all_dirs: BTreeMap<Arc<Url>, Arc<WorkspaceDirectory>>,
   pub deno_dir_provider: Arc<DenoDirProvider>,
-  pub scope_options: Option<Arc<ScopeOptions>>,
 }
 
 impl CliOptions {
@@ -611,7 +601,6 @@ impl CliOptions {
     start_dir: Arc<WorkspaceDirectory>,
     force_global_cache: bool,
     maybe_external_import_map: Option<(PathBuf, serde_json::Value)>,
-    scope_options: Option<Arc<ScopeOptions>>,
   ) -> Result<Self, AnyError> {
     if let Some(insecure_allowlist) =
       flags.unsafely_ignore_certificate_errors.as_ref()
@@ -643,6 +632,9 @@ impl CliOptions {
 
     load_env_variables_from_env_file(flags.env_file.as_ref());
 
+    let all_dirs = [(start_dir.dir_url().clone(), start_dir.clone())]
+      .into_iter()
+      .collect();
     Ok(Self {
       flags,
       initial_cwd,
@@ -653,9 +645,8 @@ impl CliOptions {
       main_module_cell: std::sync::OnceLock::new(),
       maybe_external_import_map,
       start_dir,
+      all_dirs,
       deno_dir_provider,
-      sys: sys.clone(),
-      scope_options,
     })
   }
 
@@ -752,39 +743,18 @@ impl CliOptions {
       Arc::new(start_dir),
       false,
       external_import_map,
-      None,
     )
   }
 
-  pub fn with_new_start_dir_and_scope_options(
+  pub fn with_all_dirs(
-    &self,
+    self,
-    start_dir: Arc<WorkspaceDirectory>,
+    all_dirs: impl IntoIterator<Item = Arc<WorkspaceDirectory>>,
-    scope_options: Option<ScopeOptions>,
+  ) -> Self {
-  ) -> Result<Self, AnyError> {
+    let all_dirs = all_dirs
-    let (npmrc, _) = discover_npmrc_from_workspace(&start_dir.workspace)?;
+      .into_iter()
-    let external_import_map =
+      .map(|d| (d.dir_url().clone(), d))
-      if let Some(deno_json) = start_dir.workspace.root_deno_json() {
+      .collect();
-        load_external_import_map(deno_json)?
+    Self { all_dirs, ..self }
-      } else {
-        None
-      };
-    let lockfile = CliLockfile::discover(
-      &self.sys,
-      &self.flags,
-      &start_dir.workspace,
-      external_import_map.as_ref().map(|(_, v)| v),
-    )?;
-    Self::new(
-      &self.sys,
-      self.flags.clone(),
-      self.initial_cwd().to_path_buf(),
-      lockfile.map(Arc::new),
-      npmrc,
-      start_dir,
-      false,
-      external_import_map,
-      scope_options.map(Arc::new),
-    )
   }
 
   /// This method is purposefully verbose to disourage its use. Do not use it

cli/factory.rs

@@ -1,6 +1,5 @@
 // Copyright 2018-2025 the Deno authors. MIT license.
 
-use std::collections::BTreeSet;
 use std::collections::HashSet;
 use std::future::Future;
 use std::path::PathBuf;
@@ -13,7 +12,6 @@ use deno_config::glob::FilePatterns;
 use deno_config::workspace::PackageJsonDepResolution;
 use deno_config::workspace::WorkspaceDirectory;
 use deno_config::workspace::WorkspaceResolver;
-use deno_core::anyhow::anyhow;
 use deno_core::error::AnyError;
 use deno_core::futures::FutureExt;
 use deno_core::FeatureChecker;
@@ -42,7 +40,6 @@ use deno_runtime::deno_fs::RealFs;
 use deno_runtime::deno_node::RealIsBuiltInNodeModuleChecker;
 use deno_runtime::deno_permissions::Permissions;
 use deno_runtime::deno_permissions::PermissionsContainer;
-use deno_runtime::deno_permissions::PermissionsOptions;
 use deno_runtime::deno_tls::rustls::RootCertStore;
 use deno_runtime::deno_tls::RootCertStoreProvider;
 use deno_runtime::deno_web::BlobStore;
@@ -57,7 +54,6 @@ use crate::args::CliOptions;
 use crate::args::DenoSubcommand;
 use crate::args::Flags;
 use crate::args::NpmInstallDepsProvider;
-use crate::args::ScopeOptions;
 use crate::args::TsConfigType;
 use crate::cache::Caches;
 use crate::cache::CodeCache;
@@ -79,7 +75,6 @@ use crate::graph_util::ModuleGraphCreator;
 use crate::http_util::HttpClientProvider;
 use crate::module_loader::CliModuleLoaderFactory;
 use crate::module_loader::ModuleLoadPreparer;
-use crate::module_loader::PrepareModuleLoadError;
 use crate::node::CliCjsCodeAnalyzer;
 use crate::node::CliNodeCodeTranslator;
 use crate::node::CliNodeResolver;
@@ -105,12 +100,10 @@ use crate::resolver::CliSloppyImportsResolver;
 use crate::resolver::FoundPackageJsonDepFlag;
 use crate::standalone::binary::DenoCompileBinaryWriter;
 use crate::sys::CliSys;
-use crate::tools::check::CheckError;
 use crate::tools::check::TypeChecker;
 use crate::tools::coverage::CoverageCollector;
 use crate::tools::lint::LintRuleProvider;
 use crate::tools::run::hmr::HmrRunner;
-use crate::tsc::Diagnostics;
 use crate::tsc::TypeCheckingCjsTracker;
 use crate::util::file_watcher::WatcherCommunicator;
 use crate::util::fs::canonicalize_path;
@@ -1247,15 +1240,96 @@ pub struct SpecifierInfo {
   pub check_doc: bool,
 }
 
-pub struct WorkspaceDirFilesFactory {
+pub struct CliFactoryWithWorkspaceFiles {
+  pub inner: CliFactory,
+  pub cli_options: Arc<CliOptions>,
   specifiers: Vec<(ModuleSpecifier, SpecifierInfo)>,
   doc_snippet_specifiers: Vec<ModuleSpecifier>,
-  cli_options: Arc<CliOptions>,
+  initial_cwd: PathBuf,
-  cli_factory: CliFactory,
-  permissions_options: Deferred<PermissionsOptions>,
 }
 
-impl WorkspaceDirFilesFactory {
+impl CliFactoryWithWorkspaceFiles {
+  #[allow(clippy::type_complexity)]
+  pub async fn from_workspace_dirs_with_files<T: Clone>(
+    mut workspace_dirs_with_files: Vec<(Arc<WorkspaceDirectory>, FilePatterns)>,
+    collect_specifiers: fn(
+      FilePatterns,
+      Arc<CliOptions>,
+      Arc<CliFileFetcher>,
+      T,
+    ) -> std::pin::Pin<
+      Box<
+        dyn Future<
+          Output = Result<Vec<(ModuleSpecifier, SpecifierInfo)>, AnyError>,
+        >,
+      >,
+    >,
+    args: T,
+    extract_doc_files: Option<fn(File) -> Result<Vec<File>, AnyError>>,
+    cli_options: CliOptions,
+    watcher_communicator: Option<&Arc<WatcherCommunicator>>,
+  ) -> Result<Self, AnyError> {
+    let cli_options =
+      Arc::new(cli_options.with_all_dirs(
+        workspace_dirs_with_files.iter().map(|(d, _)| d.clone()),
+      ));
+    let mut factory = CliFactory::from_cli_options(cli_options.clone());
+    factory.watcher_communicator = watcher_communicator.cloned();
+    let initial_cwd = cli_options.initial_cwd().to_path_buf();
+    if let Some(watcher_communicator) = watcher_communicator {
+      let _ = watcher_communicator.watch_paths(cli_options.watch_paths());
+    }
+    workspace_dirs_with_files.sort_by_cached_key(|(d, _)| d.dir_url().clone());
+    let mut specifiers = Vec::new();
+    let mut doc_snippet_specifiers = Vec::new();
+    for (_, files) in workspace_dirs_with_files {
+      if let Some(watcher_communicator) = watcher_communicator {
+        let _ = watcher_communicator.watch_paths(
+          files
+            .include
+            .iter()
+            .flat_map(|set| set.base_paths())
+            .collect(),
+        );
+      }
+      let file_fetcher = factory.file_fetcher()?;
+      let dir_specifiers = collect_specifiers(
+        files,
+        cli_options.clone(),
+        file_fetcher.clone(),
+        args.clone(),
+      )
+      .await?;
+      if let Some(extract_doc_files) = extract_doc_files {
+        let root_permissions = factory.root_permissions_container()?;
+        for (s, _) in dir_specifiers.iter().filter(|(_, i)| i.check_doc) {
+          let file = file_fetcher.fetch(s, root_permissions).await?;
+          let snippet_files = extract_doc_files(file)?;
+          for snippet_file in snippet_files {
+            doc_snippet_specifiers.push(snippet_file.url.clone());
+            file_fetcher.insert_memory_files(snippet_file);
+          }
+        }
+      }
+      specifiers.extend(dir_specifiers);
+    }
+    Ok(Self {
+      inner: factory,
+      cli_options,
+      specifiers,
+      doc_snippet_specifiers,
+      initial_cwd,
+    })
+  }
+
+  pub fn initial_cwd(&self) -> &PathBuf {
+    &self.initial_cwd
+  }
+
+  pub fn found_specifiers(&self) -> bool {
+    !self.specifiers.is_empty()
+  }
+
   pub fn checked_specifiers(&self) -> impl Iterator<Item = &ModuleSpecifier> {
     self
       .specifiers
@@ -1268,23 +1342,20 @@ impl WorkspaceDirFilesFactory {
     &self,
     canonicalized_dep_paths: &HashSet<PathBuf>,
   ) -> Result<Vec<&ModuleSpecifier>, AnyError> {
-    let graph_kind = self
+    let graph_kind =
-      .cli_factory
+      self.inner.cli_options()?.type_check_mode().as_graph_kind();
-      .cli_options()?
+    let module_graph_creator = self.inner.module_graph_creator().await?;
-      .type_check_mode()
+    let specifiers = self.checked_specifiers().collect::<Vec<_>>();
-      .as_graph_kind();
-    let module_graph_creator = self.cli_factory.module_graph_creator().await?;
-    let specifiers = self.checked_specifiers().cloned().collect::<Vec<_>>();
     let graph = module_graph_creator
       .create_graph(
         graph_kind,
-        specifiers.clone(),
+        specifiers.iter().map(|&s| s.clone()).collect(),
         crate::graph_util::NpmCachingStrategy::Eager,
       )
       .await?;
     module_graph_creator.graph_valid(&graph)?;
-    let dependent_specifiers = self
+    let dependent_specifiers = specifiers
-      .checked_specifiers()
+      .into_iter()
       .filter(|s| {
         let mut dependency_specifiers = graph.walk(
           std::iter::once(*s),
@@ -1313,172 +1384,16 @@ impl WorkspaceDirFilesFactory {
     Ok(dependent_specifiers)
   }
 
-  pub fn permissions_options(&self) -> &PermissionsOptions {
-    self
-      .permissions_options
-      .get_or_init(|| self.cli_options.permissions_options())
-  }
-
-  pub fn permission_desc_parser(
-    &self,
-  ) -> Result<&Arc<RuntimePermissionDescriptorParser<CliSys>>, AnyError> {
-    self.cli_factory.permission_desc_parser()
-  }
-
-  pub async fn create_cli_main_worker_factory(
-    &self,
-  ) -> Result<CliMainWorkerFactory, AnyError> {
-    self.cli_factory.create_cli_main_worker_factory().await
-  }
-}
-
-pub struct WorkspaceFilesFactory {
-  dirs: Vec<WorkspaceDirFilesFactory>,
-  initial_cwd: PathBuf,
-}
-
-impl WorkspaceFilesFactory {
-  #[allow(clippy::type_complexity)]
-  pub async fn from_workspace_dirs_with_files<T: Clone>(
-    mut workspace_dirs_with_files: Vec<(Arc<WorkspaceDirectory>, FilePatterns)>,
-    collect_specifiers: fn(
-      FilePatterns,
-      Arc<CliOptions>,
-      Arc<CliFileFetcher>,
-      T,
-    ) -> std::pin::Pin<
-      Box<
-        dyn Future<
-          Output = Result<Vec<(ModuleSpecifier, SpecifierInfo)>, AnyError>,
-        >,
-      >,
-    >,
-    args: T,
-    extract_doc_files: Option<fn(File) -> Result<Vec<File>, AnyError>>,
-    cli_options: &CliOptions,
-    watcher_communicator: Option<&Arc<WatcherCommunicator>>,
-  ) -> Result<Self, AnyError> {
-    let initial_cwd = cli_options.initial_cwd().to_path_buf();
-    if let Some(watcher_communicator) = watcher_communicator {
-      let _ = watcher_communicator.watch_paths(cli_options.watch_paths());
-    }
-    workspace_dirs_with_files.sort_by_cached_key(|(d, _)| d.dir_url().clone());
-    let all_scopes = Arc::new(
-      workspace_dirs_with_files
-        .iter()
-        .filter(|(d, _)| d.has_deno_or_pkg_json())
-        .map(|(d, _)| d.dir_url().clone())
-        .collect::<BTreeSet<_>>(),
-    );
-    let dir_count = workspace_dirs_with_files.len();
-    let mut dirs = Vec::with_capacity(dir_count);
-    for (workspace_dir, files) in workspace_dirs_with_files {
-      if let Some(watcher_communicator) = watcher_communicator {
-        let _ = watcher_communicator.watch_paths(
-          files
-            .include
-            .iter()
-            .flat_map(|set| set.base_paths())
-            .collect(),
-        );
-      }
-      let scope_options = (dir_count > 1).then(|| ScopeOptions {
-        scope: workspace_dir
-          .has_deno_or_pkg_json()
-          .then(|| workspace_dir.dir_url().clone()),
-        all_scopes: all_scopes.clone(),
-      });
-      let cli_options = Arc::new(
-        cli_options
-          .with_new_start_dir_and_scope_options(workspace_dir, scope_options)?,
-      );
-      let mut factory = CliFactory::from_cli_options(cli_options.clone());
-      factory.watcher_communicator = watcher_communicator.cloned();
-      let file_fetcher = factory.file_fetcher()?;
-      let specifiers = collect_specifiers(
-        files,
-        cli_options.clone(),
-        file_fetcher.clone(),
-        args.clone(),
-      )
-      .await?;
-      let mut doc_snippet_specifiers = vec![];
-      if let Some(extract_doc_files) = extract_doc_files {
-        let root_permissions = factory.root_permissions_container()?;
-        for (s, _) in specifiers.iter().filter(|(_, i)| i.check_doc) {
-          let file = file_fetcher.fetch(s, root_permissions).await?;
-          let snippet_files = extract_doc_files(file)?;
-          for snippet_file in snippet_files {
-            doc_snippet_specifiers.push(snippet_file.url.clone());
-            file_fetcher.insert_memory_files(snippet_file);
-          }
-        }
-      }
-      dirs.push(WorkspaceDirFilesFactory {
-        specifiers,
-        doc_snippet_specifiers,
-        cli_options,
-        cli_factory: factory,
-        permissions_options: Default::default(),
-      });
-    }
-    Ok(Self { dirs, initial_cwd })
-  }
-
-  pub fn dirs(&self) -> &Vec<WorkspaceDirFilesFactory> {
-    &self.dirs
-  }
-
-  pub fn initial_cwd(&self) -> &PathBuf {
-    &self.initial_cwd
-  }
-
-  pub fn found_specifiers(&self) -> bool {
-    self.dirs.iter().any(|e| !e.specifiers.is_empty())
-  }
-
   pub async fn check(&self) -> Result<(), AnyError> {
-    let mut diagnostics = vec![];
+    let main_graph_container =
-    let mut all_errors = vec![];
+      self.inner.main_module_graph_container().await?.clone();
-    for entry in &self.dirs {
+    let specifiers = self.checked_specifiers().cloned().collect::<Vec<_>>();
-      let main_graph_container = entry
+    if specifiers.is_empty() {
-        .cli_factory
+      return Ok(());
-        .main_module_graph_container()
-        .await?
-        .clone();
-      let specifiers_for_typecheck =
-        entry.checked_specifiers().cloned().collect::<Vec<_>>();
-      if specifiers_for_typecheck.is_empty() {
-        continue;
     }
-      let ext_flag = entry.cli_factory.cli_options()?.ext_flag().as_ref();
+    let ext_flag = self.cli_options.ext_flag().as_ref();
-      if let Err(err) = main_graph_container
+    main_graph_container
-        .check_specifiers(&specifiers_for_typecheck, ext_flag)
+      .check_specifiers(&specifiers, ext_flag)
       .await
-      {
-        match err {
-          PrepareModuleLoadError::Check(CheckError::Diagnostics(
-            Diagnostics(d),
-          )) => diagnostics.extend(d),
-          err => all_errors.push(err),
-        }
-      }
-    }
-    if !diagnostics.is_empty() {
-      all_errors.push(PrepareModuleLoadError::Check(CheckError::Diagnostics(
-        Diagnostics(diagnostics),
-      )));
-    }
-    if !all_errors.is_empty() {
-      return Err(anyhow!(
-        "{}",
-        all_errors
-          .into_iter()
-          .map(|e| e.to_string())
-          .collect::<Vec<_>>()
-          .join("\n\n"),
-      ));
-    }
-    Ok(())
   }
 }

cli/graph_container.rs

@@ -13,7 +13,6 @@ use deno_runtime::deno_permissions::PermissionsContainer;
 
 use crate::args::CliOptions;
 use crate::module_loader::ModuleLoadPreparer;
-use crate::module_loader::PrepareModuleLoadError;
 use crate::util::fs::collect_specifiers;
 use crate::util::path::is_script_ext;
 
@@ -70,7 +69,7 @@ impl MainModuleGraphContainer {
     &self,
     specifiers: &[ModuleSpecifier],
     ext_overwrite: Option<&String>,
-  ) -> Result<(), PrepareModuleLoadError> {
+  ) -> Result<(), AnyError> {
     let mut graph_permit = self.acquire_update_permit().await;
     let graph = graph_permit.graph_mut();
     self
@@ -100,7 +99,7 @@ impl MainModuleGraphContainer {
       log::warn!("{} No matching files found.", colors::yellow("Warning"));
     }
 
-    Ok(self.check_specifiers(&specifiers, None).await?)
+    self.check_specifiers(&specifiers, None).await
   }
 
   pub fn collect_specifiers(

cli/lsp/language_server.rs

@@ -3666,7 +3666,6 @@ impl Inner {
       workspace,
       force_global_cache,
       None,
-      None,
     )?;
 
     let open_docs = self.documents.documents(DocumentsFilter::OpenDiagnosable);

cli/tools/bench/mod.rs

@@ -39,8 +39,8 @@ use crate::args::CliOptions;
 use crate::args::Flags;
 use crate::colors;
 use crate::display::write_json_to_stdout;
+use crate::factory::CliFactoryWithWorkspaceFiles;
 use crate::factory::SpecifierInfo;
-use crate::factory::WorkspaceFilesFactory;
 use crate::ops;
 use crate::sys::CliSys;
 use crate::tools::test::format_test_error;
@@ -284,42 +284,32 @@ async fn bench_specifier_inner(
 
 /// Test a collection of specifiers with test modes concurrently.
 async fn bench_specifiers(
-  workspace_files_factory: &WorkspaceFilesFactory,
+  factory: &CliFactoryWithWorkspaceFiles,
   changed_paths: Option<&HashSet<PathBuf>>,
   options: BenchSpecifierOptions,
 ) -> Result<(), AnyError> {
-  let mut specifiers_with_services = vec![];
-  for factory in workspace_files_factory.dirs() {
-    let worker_factory =
-      Arc::new(factory.create_cli_main_worker_factory().await?);
-    let permission_desc_parser = factory.permission_desc_parser()?;
-    let permissions = Arc::new(Permissions::from_options(
-      permission_desc_parser.as_ref(),
-      factory.permissions_options(),
-    )?);
   let specifiers = if let Some(changed_paths) = changed_paths {
     factory.dependent_checked_specifiers(changed_paths).await?
   } else {
     factory.checked_specifiers().collect()
   };
-    specifiers_with_services.extend(specifiers.into_iter().map(|s| {
+  let worker_factory =
-      (
+    Arc::new(factory.inner.create_cli_main_worker_factory().await?);
-        s.clone(),
+  let permission_desc_parser = factory.inner.permission_desc_parser()?;
-        worker_factory.clone(),
+  let permissions = Permissions::from_options(
-        permission_desc_parser.clone(),
+    permission_desc_parser.as_ref(),
-        permissions.clone(),
+    &factory.cli_options.permissions_options(),
-      )
+  )?;
-    }));
+
-  }
   let (sender, mut receiver) = unbounded_channel::<BenchEvent>();
   let log_level = options.log_level;
   let option_for_handles = options.clone();
 
-  let join_handles = specifiers_with_services.into_iter().map(
+  let join_handles = specifiers.into_iter().cloned().map(move |specifier| {
-    move |(specifier, worker_factory, permissions_desc_parser, permissions)| {
+    let worker_factory = worker_factory.clone();
     let permissions_container = PermissionsContainer::new(
-        permissions_desc_parser.clone(),
+      permission_desc_parser.clone(),
-        permissions.as_ref().clone(),
+      permissions.clone(),
     );
     let sender = sender.clone();
     let options = option_for_handles.clone();
@@ -333,8 +323,7 @@ async fn bench_specifiers(
       );
       create_and_run_current_thread(future)
     })
-    },
+  });
-  );
 
   let join_stream = stream::iter(join_handles)
     .buffer_unordered(1)
@@ -457,9 +446,8 @@ pub async fn run_benchmarks(
     .resolve_bench_options_for_members(&bench_flags)?
     .into_iter()
     .map(|(d, o)| (d, o.files))
-    .collect();
+    .collect::<Vec<_>>();
-  let workspace_files_factory =
+  let factory = CliFactoryWithWorkspaceFiles::from_workspace_dirs_with_files(
-    WorkspaceFilesFactory::from_workspace_dirs_with_files(
     workspace_dirs_with_files,
     |patterns, cli_options, _, _| {
       async move {
@@ -478,22 +466,22 @@ pub async fn run_benchmarks(
     },
     (),
     None,
-      &cli_options,
+    cli_options,
     None,
   )
   .await?;
-  if !workspace_files_factory.found_specifiers() {
+  if !factory.found_specifiers() {
     return Err(anyhow!("No test modules found"));
   }
 
-  workspace_files_factory.check().await?;
+  factory.check().await?;
 
   if bench_flags.no_run {
     return Ok(());
   }
 
   bench_specifiers(
-    &workspace_files_factory,
+    &factory,
     None,
     BenchSpecifierOptions {
       filter: TestFilter::from_flag(&bench_flags.filter),
@@ -531,8 +519,8 @@ pub async fn run_benchmarks_with_watch(
           .into_iter()
           .map(|(d, o)| (d, o.files))
           .collect::<Vec<_>>();
-        let workspace_files_factory =
+        let factory =
-          WorkspaceFilesFactory::from_workspace_dirs_with_files(
+          CliFactoryWithWorkspaceFiles::from_workspace_dirs_with_files(
             workspace_dirs_with_files,
             |patterns, cli_options, _, _| {
               async move {
@@ -551,19 +539,19 @@ pub async fn run_benchmarks_with_watch(
             },
             (),
             None,
-            &cli_options,
+            cli_options,
             Some(&watcher_communicator),
           )
           .await?;
 
-        workspace_files_factory.check().await?;
+        factory.check().await?;
 
         if bench_flags.no_run {
           return Ok(());
         }
 
         bench_specifiers(
-          &workspace_files_factory,
+          &factory,
           changed_paths.map(|p| p.into_iter().collect()).as_ref(),
           BenchSpecifierOptions {
             filter: TestFilter::from_flag(&bench_flags.filter),

cli/tools/check.rs

@@ -1,5 +1,6 @@
 // Copyright 2018-2025 the Deno authors. MIT license.
 
+use std::collections::BTreeMap;
 use std::collections::HashSet;
 use std::collections::VecDeque;
 use std::sync::Arc;
@@ -7,6 +8,7 @@ use std::sync::Arc;
 use deno_ast::MediaType;
 use deno_ast::ModuleSpecifier;
 use deno_config::deno_json;
+use deno_config::workspace::WorkspaceDirectory;
 use deno_core::error::AnyError;
 use deno_core::futures::FutureExt;
 use deno_error::JsErrorBox;
@@ -15,6 +17,7 @@ use deno_graph::ModuleError;
 use deno_graph::ModuleGraph;
 use deno_graph::ModuleLoadError;
 use deno_lib::util::hash::FastInsecureHasher;
+use deno_path_util::url_from_directory_path;
 use deno_semver::npm::NpmPackageNvReference;
 use deno_terminal::colors;
 use once_cell::sync::Lazy;
@@ -32,8 +35,8 @@ use crate::args::TypeCheckMode;
 use crate::cache::CacheDBHash;
 use crate::cache::Caches;
 use crate::cache::TypeCheckCache;
+use crate::factory::CliFactoryWithWorkspaceFiles;
 use crate::factory::SpecifierInfo;
-use crate::factory::WorkspaceFilesFactory;
 use crate::graph_util::maybe_additional_sloppy_imports_message;
 use crate::graph_util::BuildFastCheckGraphOptions;
 use crate::graph_util::ModuleGraphBuilder;
@@ -59,8 +62,7 @@ pub async fn check(
       ignore: Default::default(),
       include: check_flags.files,
     })?;
-  let workspace_files_factory =
+  let factory = CliFactoryWithWorkspaceFiles::from_workspace_dirs_with_files(
-    WorkspaceFilesFactory::from_workspace_dirs_with_files(
     workspace_dirs_with_files,
     |patterns, cli_options, _, (doc, doc_only)| {
       async move {
@@ -79,14 +81,14 @@ pub async fn check(
     },
     (check_flags.doc, check_flags.doc_only),
     Some(extract_snippet_files),
-      &cli_options,
+    cli_options,
     None,
   )
   .await?;
-  if !workspace_files_factory.found_specifiers() {
+  if !factory.found_specifiers() {
     log::warn!("{} No matching files found.", colors::yellow("Warning"));
   }
-  workspace_files_factory.check().await
+  factory.check().await
 }
 
 /// Options for performing a check of a module graph. Note that the decision to
@@ -229,17 +231,6 @@ impl TypeChecker {
     }
 
     log::debug!("Type checking.");
-    let ts_config_result = self
-      .cli_options
-      .resolve_ts_config_for_emit(TsConfigType::Check { lib: options.lib })?;
-    if options.log_ignored_options {
-      check_warn_tsconfig(&ts_config_result);
-    }
-
-    let type_check_mode = options.type_check_mode;
-    let ts_config = ts_config_result.ts_config;
-    let cache = TypeCheckCache::new(self.caches.type_checking_cache_db());
-    let check_js = ts_config.get_check_js();
 
     // add fast check to the graph before getting the roots
     if options.build_fast_check_graph {
@@ -251,20 +242,45 @@ impl TypeChecker {
       )?;
     }
 
+    let graph = Arc::new(graph);
+
+    let mut all_dirs = self.cli_options.all_dirs.clone();
+    let initial_cwd_url =
+      url_from_directory_path(self.cli_options.initial_cwd())
+        .map_err(JsErrorBox::from_err)?;
+    let initial_workspace_dir_url = all_dirs
+      .keys()
+      .rfind(|s| initial_cwd_url.as_str().starts_with(s.as_str()))
+      .cloned()
+      .unwrap_or_else(|| {
+        all_dirs.insert(
+          self.cli_options.start_dir.dir_url().clone(),
+          self.cli_options.start_dir.clone(),
+        );
+        self.cli_options.start_dir.dir_url().clone()
+      });
+    let is_scoped = all_dirs.len() > 1;
+
+    let mut diagnostics = Diagnostics::default();
+
+    for (dir_url, workspace_dir) in &all_dirs {
+      let is_initial_workspace_dir = *dir_url == initial_workspace_dir_url;
+      let ts_config_result = workspace_dir
+        .to_ts_config_for_emit(TsConfigType::Check { lib: options.lib })?;
+      if options.log_ignored_options {
+        check_warn_tsconfig(&ts_config_result);
+      }
+      let type_check_mode = options.type_check_mode;
+      let ts_config = ts_config_result.ts_config;
+      let cache = TypeCheckCache::new(self.caches.type_checking_cache_db());
+      let check_js = ts_config.get_check_js();
+
       let is_visible_diagnostic = |d: &tsc::Diagnostic| {
         if self.is_remote_diagnostic(d) {
           return type_check_mode == TypeCheckMode::All
             && d.include_when_remote()
-          && self
+            && !is_scoped;
-            .cli_options
-            .scope_options
-            .as_ref()
-            .map(|o| o.scope.is_none())
-            .unwrap_or(true);
         }
-      let Some(scope_options) = &self.cli_options.scope_options else {
-        return true;
-      };
         let Some(specifier) = d
           .file_name
           .as_ref()
@@ -275,14 +291,16 @@ impl TypeChecker {
         if specifier.scheme() != "file" {
           return true;
         }
-      let scope = scope_options
+        let scope = all_dirs
-        .all_scopes
+          .keys()
-        .iter()
           .rfind(|s| specifier.as_str().starts_with(s.as_str()));
-      scope == scope_options.scope.as_ref()
+        scope
+          .map(|s| s == dir_url)
+          .unwrap_or(is_initial_workspace_dir)
       };
       let TscRoots {
         roots: root_names,
+        display_roots,
         missing_diagnostics,
         maybe_check_hash,
       } = get_tsc_roots(
@@ -294,24 +312,31 @@ impl TypeChecker {
         check_state_hash(&self.npm_resolver),
         type_check_mode,
         &ts_config,
+        &all_dirs,
+        &initial_workspace_dir_url,
+        is_scoped.then_some(dir_url.as_ref()),
       );
 
-    let missing_diagnostics = missing_diagnostics.filter(is_visible_diagnostic);
+      let missing_diagnostics =
+        missing_diagnostics.filter(is_visible_diagnostic);
+      let has_missing_diagnostics = !missing_diagnostics.is_empty();
+      diagnostics.extend(missing_diagnostics);
 
-    if root_names.is_empty() && missing_diagnostics.is_empty() {
+      if root_names.is_empty() {
-      return Ok((graph.into(), Default::default()));
+        continue;
       }
+
       if !options.reload {
         // do not type check if we know this is type checked
         if let Some(check_hash) = maybe_check_hash {
           if cache.has_check_hash(check_hash) {
             log::debug!("Already type checked.");
-          return Ok((graph.into(), Default::default()));
+            continue;
           }
         }
       }
 
-    for root in &graph.roots {
+      for root in &display_roots {
         let root_str = root.as_str();
         log::info!(
           "{} {}",
@@ -323,10 +348,11 @@ impl TypeChecker {
       // while there might be multiple roots, we can't "merge" the build info, so we
       // try to retrieve the build info for first root, which is the most common use
       // case.
+      let first_root = root_names[0].0.clone();
       let maybe_tsbuildinfo = if options.reload {
         None
       } else {
-      cache.get_tsbuildinfo(&graph.roots[0])
+        cache.get_tsbuildinfo(&first_root)
       };
       // to make tsc build info work, we need to consistently hash modules, so that
       // tsc can better determine if an emit is still valid or not, so we provide
@@ -334,7 +360,6 @@ impl TypeChecker {
       let tsconfig_hash_data = FastInsecureHasher::new_deno_versioned()
         .write(&ts_config.as_bytes())
         .finish();
-    let graph = Arc::new(graph);
       let response = tsc::exec(tsc::Request {
         config: ts_config,
         debug: self.cli_options.log_level() == Some(log::Level::Debug),
@@ -353,22 +378,22 @@ impl TypeChecker {
       let response_diagnostics =
         response.diagnostics.filter(is_visible_diagnostic);
 
-    let mut diagnostics = missing_diagnostics;
-    diagnostics.extend(response_diagnostics);
-
-    diagnostics.apply_fast_check_source_maps(&graph);
-
       if let Some(tsbuildinfo) = response.maybe_tsbuildinfo {
-      cache.set_tsbuildinfo(&graph.roots[0], &tsbuildinfo);
+        cache.set_tsbuildinfo(&first_root, &tsbuildinfo);
       }
 
-    if diagnostics.is_empty() {
+      if !has_missing_diagnostics && response_diagnostics.is_empty() {
         if let Some(check_hash) = maybe_check_hash {
           cache.add_check_hash(check_hash);
         }
       }
 
+      diagnostics.extend(response_diagnostics);
+
       log::debug!("{}", response.stats);
+    }
+
+    diagnostics.apply_fast_check_source_maps(&graph);
 
     Ok((graph, diagnostics))
   }
@@ -390,6 +415,7 @@ impl TypeChecker {
 
 struct TscRoots {
   roots: Vec<(ModuleSpecifier, MediaType)>,
+  display_roots: Vec<ModuleSpecifier>,
   missing_diagnostics: tsc::Diagnostics,
   maybe_check_hash: Option<CacheDBHash>,
 }
@@ -410,6 +436,9 @@ fn get_tsc_roots(
   npm_cache_state_hash: Option<u64>,
   type_check_mode: TypeCheckMode,
   ts_config: &TsConfig,
+  all_dirs: &BTreeMap<Arc<ModuleSpecifier>, Arc<WorkspaceDirectory>>,
+  initial_workspace_dir_url: &ModuleSpecifier,
+  current_workspace_dir_url: Option<&ModuleSpecifier>,
 ) -> TscRoots {
   fn maybe_get_check_entry(
     module: &deno_graph::Module,
@@ -495,6 +524,7 @@ fn get_tsc_roots(
 
   let mut result = TscRoots {
     roots: Vec::with_capacity(graph.specifiers_count()),
+    display_roots: Vec::with_capacity(graph.roots.len()),
     missing_diagnostics: Default::default(),
     maybe_check_hash: None,
   };
@@ -525,6 +555,16 @@ fn get_tsc_roots(
 
   // put in the global types first so that they're resolved before anything else
   for (referrer, import) in graph.imports.iter() {
+    if let Some(current_workspace_dir_url) = current_workspace_dir_url {
+      let scope = all_dirs
+        .keys()
+        .rfind(|s| referrer.as_str().starts_with(s.as_str()))
+        .map(|s| s.as_ref())
+        .unwrap_or(initial_workspace_dir_url);
+      if scope != current_workspace_dir_url {
+        continue;
+      }
+    }
     for specifier in import
       .dependencies
       .values()
@@ -556,6 +596,17 @@ fn get_tsc_roots(
 
   // then the roots
   for root in &graph.roots {
+    if let Some(current_workspace_dir_url) = current_workspace_dir_url {
+      let scope = all_dirs
+        .keys()
+        .rfind(|s| root.as_str().starts_with(s.as_str()))
+        .map(|s| s.as_ref())
+        .unwrap_or(initial_workspace_dir_url);
+      if scope != current_workspace_dir_url {
+        continue;
+      }
+    }
+    result.display_roots.push(root.clone());
     let specifier = graph.resolve(root);
     if seen.insert(specifier) {
       pending.push_back((specifier, false));

cli/tools/test/mod.rs

@@ -73,8 +73,8 @@ use crate::args::TestFlags;
 use crate::args::TestReporterConfig;
 use crate::colors;
 use crate::display;
+use crate::factory::CliFactoryWithWorkspaceFiles;
 use crate::factory::SpecifierInfo;
-use crate::factory::WorkspaceFilesFactory;
 use crate::file_fetcher::CliFileFetcher;
 use crate::ops;
 use crate::sys::CliSys;
@@ -1180,38 +1180,27 @@ static HAS_TEST_RUN_SIGINT_HANDLER: AtomicBool = AtomicBool::new(false);
 
 /// Test a collection of specifiers with test modes concurrently.
 async fn test_specifiers(
-  workspace_files_factory: &WorkspaceFilesFactory,
+  factory: &CliFactoryWithWorkspaceFiles,
   changed_paths: Option<&HashSet<PathBuf>>,
   options: TestSpecifiersOptions,
 ) -> Result<(), AnyError> {
-  let mut specifiers_with_services = vec![];
+  let mut specifiers = if let Some(changed_paths) = changed_paths {
-  for factory in workspace_files_factory.dirs() {
-    let worker_factory =
-      Arc::new(factory.create_cli_main_worker_factory().await?);
-    let permission_desc_parser = factory.permission_desc_parser()?;
-    let permissions = Arc::new(Permissions::from_options(
-      permission_desc_parser.as_ref(),
-      factory.permissions_options(),
-    )?);
-    let specifiers = if let Some(changed_paths) = changed_paths {
     factory.dependent_checked_specifiers(changed_paths).await?
   } else {
     factory.checked_specifiers().collect()
   };
-    specifiers_with_services.extend(specifiers.into_iter().map(|s| {
-      (
-        s.clone(),
-        worker_factory.clone(),
-        permission_desc_parser.clone(),
-        permissions.clone(),
-      )
-    }));
-  }
   if let Some(seed) = options.specifier.shuffle {
     let mut rng = SmallRng::seed_from_u64(seed);
-    specifiers_with_services.sort_by_cached_key(|(s, ..)| s.to_string());
+    specifiers.sort();
-    specifiers_with_services.shuffle(&mut rng);
+    specifiers.shuffle(&mut rng);
   }
+  let worker_factory =
+    Arc::new(factory.inner.create_cli_main_worker_factory().await?);
+  let permission_desc_parser = factory.inner.permission_desc_parser()?;
+  let permissions = Permissions::from_options(
+    permission_desc_parser.as_ref(),
+    &factory.cli_options.permissions_options(),
+  )?;
 
   let (test_event_sender_factory, receiver) = create_test_event_channel();
   let concurrent_jobs = options.concurrent_jobs;
@@ -1225,11 +1214,11 @@ async fn test_specifiers(
   let reporter = get_test_reporter(&options);
   let fail_fast_tracker = FailFastTracker::new(options.fail_fast);
 
-  let join_handles = specifiers_with_services.into_iter().map(
+  let join_handles = specifiers.into_iter().cloned().map(move |specifier| {
-    move |(specifier, worker_factory, permission_desc_parser, permissions)| {
+    let worker_factory = worker_factory.clone();
     let permissions_container = PermissionsContainer::new(
-        permission_desc_parser,
+      permission_desc_parser.clone(),
-        permissions.as_ref().clone(),
+      permissions.clone(),
     );
     let worker_sender = test_event_sender_factory.worker();
     let fail_fast_tracker = fail_fast_tracker.clone();
@@ -1244,8 +1233,7 @@ async fn test_specifiers(
         specifier_options,
       ))
     })
-    },
+  });
-  );
 
   let join_stream = stream::iter(join_handles)
     .buffer_unordered(concurrent_jobs.get())
@@ -1516,9 +1504,8 @@ pub async fn run_tests(
     .resolve_test_options_for_members(&test_flags)?
     .into_iter()
     .map(|(d, o)| (d, o.files))
-    .collect();
+    .collect::<Vec<_>>();
-  let workspace_files_factory =
+  let factory = CliFactoryWithWorkspaceFiles::from_workspace_dirs_with_files(
-    WorkspaceFilesFactory::from_workspace_dirs_with_files(
     workspace_dirs_with_files,
     |patterns, cli_options, file_fetcher, doc| {
       collect_specifiers_for_tests(patterns, cli_options, file_fetcher, doc)
@@ -1526,30 +1513,29 @@ pub async fn run_tests(
     },
     test_flags.doc,
     Some(extract_doc_tests),
-      &cli_options,
+    cli_options,
     None,
   )
   .await?;
-  if !test_flags.permit_no_files && !workspace_files_factory.found_specifiers()
+  if !test_flags.permit_no_files && !factory.found_specifiers() {
-  {
     return Err(anyhow!("No test modules found"));
   }
 
-  workspace_files_factory.check().await?;
+  factory.check().await?;
 
   if test_flags.no_run {
     return Ok(());
   }
 
-  let initial_cwd = workspace_files_factory.initial_cwd();
+  let initial_cwd = factory.initial_cwd();
   test_specifiers(
-    &workspace_files_factory,
+    &factory,
     None,
     TestSpecifiersOptions {
       cwd: Url::from_directory_path(initial_cwd).map_err(|_| {
         anyhow!(
           "Unable to construct URL from the path of cwd: {}",
-          cli_options.initial_cwd().to_string_lossy(),
+          factory.cli_options.initial_cwd().to_string_lossy(),
         )
       })?,
       concurrent_jobs: test_flags
@@ -1612,8 +1598,8 @@ pub async fn run_tests_with_watch(
           .into_iter()
           .map(|(d, o)| (d, o.files))
           .collect::<Vec<_>>();
-        let workspace_files_factory =
+        let factory =
-          WorkspaceFilesFactory::from_workspace_dirs_with_files(
+          CliFactoryWithWorkspaceFiles::from_workspace_dirs_with_files(
             workspace_dirs_with_files,
             |patterns, cli_options, file_fetcher, doc| {
               collect_specifiers_for_tests(
@@ -1626,26 +1612,26 @@ pub async fn run_tests_with_watch(
             },
             test_flags.doc,
             Some(extract_doc_tests),
-            &cli_options,
+            cli_options,
             Some(&watcher_communicator),
           )
           .await?;
 
-        workspace_files_factory.check().await?;
+        factory.check().await?;
 
         if test_flags.no_run {
           return Ok(());
         }
 
-        let initial_cwd = workspace_files_factory.initial_cwd();
+        let initial_cwd = factory.initial_cwd();
         test_specifiers(
-          &workspace_files_factory,
+          &factory,
           changed_paths.map(|p| p.into_iter().collect()).as_ref(),
           TestSpecifiersOptions {
             cwd: Url::from_directory_path(initial_cwd).map_err(|_| {
               anyhow!(
                 "Unable to construct URL from the path of cwd: {}",
-                cli_options.initial_cwd().to_string_lossy(),
+                factory.cli_options.initial_cwd().to_string_lossy(),
               )
             })?,
             concurrent_jobs: test_flags

tests/specs/check/module_not_found/missing_local_root.out

@@ -1,2 +1 @@
-Check file:///[WILDLINE]/non_existent.ts
 error: TS2307 [ERROR]: Cannot find module 'file:///[WILDLINE]/non_existent.ts'.

tests/specs/check/module_not_found/missing_remote_root.out

@@ -1,3 +1,2 @@
 Download http://localhost:4545/missing_non_existent.ts
-Check http://localhost:4545/missing_non_existent.ts
 error: TS2307 [ERROR]: Cannot find module 'http://localhost:4545/missing_non_existent.ts'.